$ ulimit -c unlimited
$ hla_est -L 100 --ml 50 -m 100 --hth 4.0 DRB4 ./WGC107111D.marked.realigned.recal/maplist/maplist_DRB4.txt ./WGC107111D.marked.realigned.recal/maplist/maplist.txt -o ./WGC107111D.marked.realigned.recal/result/WGC107111D.marked.realigned.recal_DRB4.est.txt --pread ./WGC107111D.marked.realigned.recal/result/WGC107111D.marked.realigned.recal_DRB4.read.txt > ./WGC107111D.marked.realigned.recal/log/WGC107111D.marked.realigned.recal_DRB4.log
Segmentation fault (core dumped)
$ gdb hla_est core.7611
GNU gdb (GDB) Red Hat Enterprise Linux (7.2-75.el6)
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later gnu.org/licenses/gp…
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This GDB was configured as "x86_64-redhat-linux-gnu".
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Reading symbols from /home/zhangjj/software/HLA-HD/hlahd.1.3.0/bin/hla_est...(no debugging symbols found)...done.
[New Thread 7611]
Missing separate debuginfo for
Try: yum --enablerepo='-debug' install /usr/lib/debug/.build-id/08/e42c6c3d2cd1e5d68a43b717c9eb3d310f2df0
Reading symbols from /home/Tools/lib64/libstdc++.so.6...done.
Loaded symbols for /home/Tools/lib64/libstdc++.so.6
Reading symbols from /lib64/libm.so.6...(no debugging symbols found)...done.
Loaded symbols for /lib64/libm.so.6
Reading symbols from /home/Tools/lib64/libgcc_s.so.1...done.
Loaded symbols for /home/Tools/lib64/libgcc_s.so.1
Reading symbols from /lib64/libc.so.6...(no debugging symbols found)...done.
Loaded symbols for /lib64/libc.so.6
Reading symbols from /lib64/ld-linux-x86-64.so.2...(no debugging symbols found)...done.
Loaded symbols for /lib64/ld-linux-x86-64.so.2
Core was generated by hla_est -L 100 --ml 50 -m 100 --hth 4.0 DRB4 ./WGC107111D.marked.realigned.reca'. Program terminated with signal 11, Segmentation fault. #0 0x0000000000406dae in Count_Map_Intron(HLA_HASH**, int, int) () warning: File "/home/Tools/lib64/libstdc++.so.6.0.27-gdb.py" auto-loading has been declined by your auto-load safe-path' set to "/usr/share/gdb/auto-load:/usr/lib/debug:/usr/bin/mono-gdb.py".
To enable execution of this file add
add-auto-load-safe-path /home/Tools/lib64/libstdc++.so.6.0.27-gdb.py
line to your configuration file "/home/zhangjj/.gdbinit".
To completely disable this security protection add
set auto-load safe-path /
line to your configuration file "/home/zhangjj/.gdbinit".
For more information about this security protection see the
"Auto-loading safe path" section in the GDB manual. E.g., run from the shell:
info "(gdb)Auto-loading safe path"
Missing separate debuginfos, use: debuginfo-install glibc-2.12-1.149.el6.x86_64
(gdb) bt
#0 0x0000000000406dae in Count_Map_Intron(HLA_HASH**, int, int) ()
#1 0x0000000000430a2e in hla_estimation::hla_estimation() ()
#2 0x000000000042fa99 in main ()
